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TRAVIS – Trajectory Analyzer and Visualizer

TRAVIS

TRAVIS, which stands for Trajectory Analyzer and Visualizer, is a software tool which can compute a plethora of functions and histograms from molecular dynamics and Monte Carlo simulation trajectories. I am the main developer of the TRAVIS program package.

Please visit the TRAVIS website: www.travis-analyzer.de

In April 2020, our new open access article on TRAVIS has been published. It describes many of the new features and algorithms which have been added to TRAVIS within the last nine years. Please have a look:

M. Brehm, M. Thomas, S. Gehrke, B. Kirchner:
“TRAVIS – A Free Analyzer for Trajectories from Molecular Simulation”,
J. Chem. Phys. 2020, 152 (16), 164105, DOI 10.1063/5.0005078.

Please see also our new tutorial on computing vibrational spectra with CP2k and TRAVIS (Oct 2018).


— Work Citing TRAVIS —

Only showing results by author “Pal, S.”. Show all citations.

Go to Author List, go to Journal List.

4 citations match the query.  Show sub-lists per year.

4 S. Pal, R. Roy, S. Paul:
"Potential of a Natural Deep Eutectic Solvent, Glyceline, in the Thermal Stability of the Trp-Cage Mini-Protein"
J. Phys. Chem. B 2020, 124 (35), 7598–7610.     (DOI 10.1021/acs.jpcb.0c03501 ) ⭳ Bib
Uses TRAVIS for SDF.
3 S. Pal, S. Paul:
"Understanding the Role of Reline, a Natural DES, on Temperature-Induced Conformational Changes of C-kit G-Quadruplex DNA: A Molecular Dynamics Study"
J. Phys. Chem. B 2020, 124 (15), 3123–3136.     (DOI 10.1021/acs.jpcb.0c00644 ) ⭳ Bib
2 S. Pal, S. Paul:
"Conformational Deviation of Thrombin Binding G-Quadruplex Aptamer (TBA) in Presence of Divalent Cation Sr2+: A Classical Molecular Dynamics Simulation Study"
Int. J. Biol. Macromol. 2019, 121, 350–363.     (DOI 10.1016/j.ijbiomac.2018.09.102 ) ⭳ Bib
Uses TRAVIS for SDF.
1 S. Pal, S. Paul:
"Effect of Hydrated and Nonhydrated Choline Chloride–Urea Deep Eutectic Solvent (Reline) on Thrombin-Binding G-Quadruplex Aptamer (TBA): A Classical Molecular Dynamics Simulation Study"
J. Phys. Chem. C 2019, 123 (18), 11686–11698.     (DOI 10.1021/acs.jpcc.9b01111 ) ⭳ Bib
Uses TRAVIS for SDF.

— Author List —

Only showing results by author “Pal, S.”. Show all citations.

Go to Article List, go to Journal List.

3 different authors contributed to the 4 articles shown above.

Citations ↓ A–ZAuthor Name ↓ A–Z
4(show)Pal, S.
4(show)Paul, S.
1(show)Roy, R.

— Journal List —

Only showing results by author “Pal, S.”. Show all citations.

Go to Article List, go to Author List.

The 4 articles shown above were published in 3 different journals.

CitationsJournal Name
2(show)J. Phys. Chem. B
1(show)Int. J. Biol. Macromol.
1(show)J. Phys. Chem. C